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A dense labelling system for more accurate 3D alignment after repeated tissue expansion & imaging

09 August 2025

Look Again

Every time you look back at a beautiful painting, you might see something new. Researchers admire their biological samples with the same reverence, often analysing one sample in cycles, each time examining different molecules to build a complete picture. Establishing markers in the sample to align each viewing is important, especially if they have been physically expanded to show the detail more clearly. Now a team has created a new algorithm using a denser labelling system for more accurate 3D alignment – something that becomes tricky after repeated tissue expansion and imaging. The results are detailed 3D images that show the precise location of molecules in a sample such as a tumour or the pictured mouse brain slice – a composite after five rounds of imaging, with colours reflecting different molecules such as a structural protein in green, excitatory neurons in gold, and brain support cells in pink.

Written by Anthony Lewis

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What is BPoD?

BPoD stands for Biomedical Picture of the Day. Managed by the MRC Laboratory of Medical Sciences until Jul 2023, it is now run independently by a dedicated team of scientists and writers. The website aims to engage everyone, young and old, in the wonders of biology, and its influence on medicine. The ever-growing archive of more than 4000 research images documents over a decade of progress. Explore the collection and see what you discover. Images are kindly provided for inclusion on this website through the generosity of scientists across the globe.

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BPoD is also available in Catalan at www.bpod.cat with translations by the University of Valencia.